Gwas Catalog
NPM · @PIPEWORX/MCP-GWAS-CATALOG · 2 COMPONENTS
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies. Look up a SNP…
Available components
Last scanned (2 hours ago)
Scores higher than 82% of npm servers
Category Health and Science
How this component scores in each security and reliability category. Every signal is checked automatically from public evidence about the published package, including repeated runs of it in an isolated sandbox, and we only credit what we can confirm. How we score → Why this is hard to score →
Supply Chain Security100
- No malware found by supply-chain analysis.Pass
- No known CVEs affecting this package version or its production dependencies.Pass
- No install/post-install scripts declared.Pass
- No production dependencies, so there is no dependency health to assess. View diagnostics → Pass
Provenance & Transparency97
- Source repository is publicly reachable at the declared URL. View diagnostics → Pass
- Cryptographically verified build provenance (signed, bound to pipeworx-io/mcp-gwas-catalog). View diagnostics → Pass
- Clear OSI-approved license (MIT).Pass
- Actively maintained (last published 2 days ago).Pass
- Disclosure check failed: no security disclosure policy was found in the source repository. See how to fix → Fail
Schema Quality & AI Usability76
- AI-judged instruction clarity (good).Pass
- Tool/resource definitions use about 344 tokens (~114/item across 3 items; 3 tools + 0 resources), lean.Pass
- Usage-examples check failed: none of the tools include examples. See how to fix → Fail
Stability & Change Management23
- Stability observed for 7 of 30 days with no destabilising changes; credit accrues until the full window elapses.Partial
Tool Coverage100
- 100% of tools have a non-trivial description (not blank, and not just the tool's name).Pass
- 100% of tool parameters carry a description.Pass
Tool Safety100
- No prompt-injection markers were found in the server instructions, tool names or descriptions we captured.Pass
- We read all 3 captured tool definition(s), and no name or description among them implies an irreversible operation.Pass
- An AI judge read all 4 captured unit(s) of tool text and found none that tries to manipulate the model reading it.Pass
Capabilities100
- Implements a supported MCP spec version (2025-11-25); the latest is 2026-07-28.Pass
Every change we have recorded for this component, newest first. Security-relevant changes are always shown. ▲ marks a change for the better, ▼ a change for the worse; unmarked changes are neutral.
- 4 Nov 26 +1
No change was recorded against any check on this day. Stability & Change Management went from 17 to 20. That category is still filling its 30-day observation window: 5 days of observed history at the previous scan, 6 at this one. The score rises as the window fills, whether or not the server changes.
- 3 Nov 26 +26
- Known CVEs: unverified → pass ▲ security
- Malware scan: unverified → pass ▲ security
- Dependency health: unverified → pass ▲ functional
- 2 Nov 26 −25
- Malware scan: pass → unverified ▼ security
- Known CVEs: pass → unverified ▼ security
- Dependency health: pass → unverified ▼ functional
- Package version: 0.2.0 → 0.2.1 functional
- 30 Oct 26 +1
No change was recorded against any check on this day. Stability & Change Management went from 0 to 3. That category is still filling its 30-day observation window: 0 days of observed history at the previous scan, 1 at this one. The score rises as the window fills, whether or not the server changes.
- 29 Oct 26 81
First indexed and scored.
Diagnostic detail from the automated scan of this channel: what the scanner observed at each step, so you can see exactly where a check passed or failed. It is informational only and never changes the trust score.
Captured 5 Nov 2026 · Analysed npm/@pipeworx/mcp-gwas-catalog@0.2.1
Provenance Verified
A signed build attestation was found and verified, binding this exact artifact to the source repository it claims to come from.
| Result | Verified |
|---|---|
| Ecosystem | npm |
| Reason | Verified |
| Discovered via | Registry attestation endpoint |
| Source repo | pipeworx-io/mcp-gwas-catalog |
| Certificate issuer | https://token.actions.githubusercontent.com |
| Certificate SAN | https://github.com/pipeworx-io/mcp-gwas-catalog/.github/workflows/publish.yml@refs/heads/main |
| Rekor log index | 3637387242 |
| Predicate type | SLSA build provenance https://slsa.dev/provenance/v1 |
| Subject digest | sha512:c824b6da2a414a2695ba69e7e84d07c2ba9e477a801b8ed51d79e26ffd469438076ededc782130470ecc4a0000f6844921297b0ce1dbe4dc5e33a1c70 |
Background: How many MCP packages publish verified provenance →
Dependencies 0 packages
| Packages resolved | 0 |
|---|---|
| Tree resolution | Complete |
Background: SBOMs and build attestations, explained →
The tools this component advertises to a client, with an estimated token cost for each. Expand a tool to see its parameters and schema. The per-tool counts are indicative and are not scored directly; the schema's total context footprint is one signal in Schema Quality & AI Usability. A tool's description is untrusted text the model reads on every call, which is what makes this list a security surface and not just an inventory: how tool poisoning works →
get_snp ~82
GWAS Catalog: look up a single-nucleotide polymorphism (SNP) by rsID. Returns functional class, chromosome/region locations, and mapped genes (with up/downstream + distance). Keyless, from EBI/NHGRI.
| Name | Type | Req | Description |
|---|---|---|---|
| rsid | string | yes | dbSNP rsID, e.g. "rs7329174". |
No output schema declared.
No examples provided.
snp_associations ~96
GWAS Catalog: get trait/disease associations for a SNP (rsID) — risk allele, p-value, odds ratio per copy, beta/effect size, and risk allele frequency. Keyless, from EBI/NHGRI.
| Name | Type | Req | Description |
|---|---|---|---|
| limit | number | – | Max associations to return (default 20). |
| rsid | string | yes | dbSNP rsID, e.g. "rs7329174". |
No output schema declared.
No examples provided.
studies_by_trait ~110
GWAS Catalog: find genome-wide association studies for a disease/trait (EFO trait, e.g. "asthma" or "type 2 diabetes"). Returns accession, PubMed ID, title, journal, date, sample size. Keyless, from EBI/NHGRI.
| Name | Type | Req | Description |
|---|---|---|---|
| limit | number | – | Max studies to return (default 10). |
| trait | string | yes | Disease or trait name, e.g. "asthma", "type 2 diabetes". |
No output schema declared.
No examples provided.
How do I install the Gwas Catalog MCP server?
Gwas Catalog runs locally as an npm package, launched with npx -y @pipeworx/mcp-gwas-catalog. Ready-made configuration for Claude, Cursor, VS Code, Codex and 5 more is on this page, copied from each client's own documentation.
npm · @pipeworx/mcp-gwas-catalog
claude mcp add pipeworx-io-gwas-catalog -- npx -y @pipeworx/mcp-gwas-catalog
What is the Gwas Catalog MCP server?
Gwas Catalog is an MCP server listed in the public MCP registry as io.github.pipeworx-io/gwas-catalog. GWAS Catalog (EBI/NHGRI) MCP, curated catalog of genome-wide association studies. Look up a SNP… This page covers its npm package (@pipeworx/mcp-gwas-catalog).
Is the Gwas Catalog MCP server safe to use?
Gwas Catalog scores 84 out of 100 on VerifyMCP. We found no known CVEs affecting it as of 5 November 2026. It declares no install or post-install scripts. Its build provenance is signed and verified. That is a record of what we were able to check automatically, not an endorsement. The category breakdown on this page shows every signal behind the number, including the ones we could not confirm.
What tools does the Gwas Catalog MCP server expose?
Gwas Catalog exposes 3 tools: get_snp, snp_associations, studies_by_trait. Their descriptions and schemas cost roughly 288 tokens of context every time the server is loaded.
Is the Gwas Catalog MCP server still maintained?
Gwas Catalog is still listed as active in the MCP registry. We last reached this channel on 5 November 2026. Those dates come from our own scans of the registry and the channel itself, not from anything the publisher announced.
What licence is the Gwas Catalog MCP server under?
Gwas Catalog declares the MIT licence, which is OSI-approved. That covers the source only, and says nothing about the cost of any service it calls.