Gtex
NPM · @PIPEWORX/MCP-GTEX · 2 COMPONENTS
GTEx MCP.
Available components
Last scanned (3 hours ago)
Scores higher than 76% of npm servers
Category Health and Science
How this component scores in each security and reliability category. Every signal is checked automatically from public evidence about the published package, including repeated runs of it in an isolated sandbox, and we only credit what we can confirm. How we score → Why this is hard to score →
Supply Chain Security100
- No malware found by supply-chain analysis.Pass
- No known CVEs affecting this package version or its production dependencies.Pass
- No install/post-install scripts declared.Pass
- No production dependencies, so there is no dependency health to assess. View diagnostics → Pass
Provenance & Transparency97
- Source repository is publicly reachable at the declared URL. View diagnostics → Pass
- Cryptographically verified build provenance (signed, bound to pipeworx-io/mcp-gtex). View diagnostics → Pass
- Clear OSI-approved license (MIT).Pass
- Actively maintained (last published 3 days ago).Pass
- Disclosure check failed: no security disclosure policy was found in the source repository. See how to fix → Fail
Schema Quality & AI Usability74
- AI-judged instruction clarity (good).Pass
- Tool/resource definitions use about 469 tokens (~93/item across 5 items; 5 tools + 0 resources), lean.Pass
- Usage-examples check failed: none of the tools include examples. See how to fix → Fail
Stability & Change Management23
- Stability observed for 7 of 30 days with no destabilising changes; credit accrues until the full window elapses.Partial
Tool Coverage89
- 100% of tools have a non-trivial description (not blank, and not just the tool's name).Pass
- 67% of tool parameters carry a description.Partial
Tool Safety100
- No prompt-injection markers were found in the server instructions, tool names or descriptions we captured.Pass
- We read all 5 captured tool definition(s), and no name or description among them implies an irreversible operation.Pass
- An AI judge read all 6 captured unit(s) of tool text and found none that tries to manipulate the model reading it.Pass
Capabilities100
- Implements a supported MCP spec version (2025-11-25); the latest is 2026-07-28.Pass
Every change we have recorded for this component, newest first. Security-relevant changes are always shown. ▲ marks a change for the better, ▼ a change for the worse; unmarked changes are neutral.
- 5 Nov 26 0
- Security disclosure: unverified → fail ▼ functional
- 4 Nov 26 +1
No change was recorded against any check on this day. Stability & Change Management went from 17 to 20. That category is still filling its 30-day observation window: 5 days of observed history at the previous scan, 6 at this one. The score rises as the window fills, whether or not the server changes.
- 3 Nov 26 +15
- Malware scan: unverified → pass ▲ security
- 2 Nov 26 −13
- Malware scan: pass → unverified ▼ security
- Security disclosure: fail → unverified ▼ functional
- Stability: unverified → 0.13 ▲ functional
- Package version: 0.2.0 → 0.2.1 functional
- 31 Oct 26 0
- Security disclosure: unverified → fail ▼ functional
- 29 Oct 26 80
First indexed and scored.
Diagnostic detail from the automated scan of this channel: what the scanner observed at each step, so you can see exactly where a check passed or failed. It is informational only and never changes the trust score.
Captured 5 Nov 2026 · Analysed npm/@pipeworx/mcp-gtex@0.2.1
Provenance Verified
A signed build attestation was found and verified, binding this exact artifact to the source repository it claims to come from.
| Result | Verified |
|---|---|
| Ecosystem | npm |
| Reason | Verified |
| Discovered via | Registry attestation endpoint |
| Source repo | pipeworx-io/mcp-gtex |
| Certificate issuer | https://token.actions.githubusercontent.com |
| Certificate SAN | https://github.com/pipeworx-io/mcp-gtex/.github/workflows/publish.yml@refs/heads/main |
| Rekor log index | 3637386422 |
| Predicate type | SLSA build provenance https://slsa.dev/provenance/v1 |
| Subject digest | sha512:515f4499e4b11d1baa22bf6e0dfe4f41fc049208f5431020425e1b2e50051ee2de9aca4d759084b315d44ac95510148dfda8f98fc611eb807d70c8755 |
Background: How many MCP packages publish verified provenance →
Dependencies 0 packages
| Packages resolved | 0 |
|---|---|
| Tree resolution | Complete |
Background: SBOMs and build attestations, explained →
The tools this component advertises to a client, with an estimated token cost for each. Expand a tool to see its parameters and schema. The per-tool counts are indicative and are not scored directly; the schema's total context footprint is one signal in Schema Quality & AI Usability. A tool's description is untrusted text the model reads on every call, which is what makes this list a security surface and not just an inventory: how tool poisoning works →
gene ~27
Gene metadata by Gencode id or symbol.
| Name | Type | Req | Description |
|---|---|---|---|
| gencode_id_or_symbol | string | yes | – |
No output schema declared.
No examples provided.
median_expression ~80
Median expression across tissues for a gene (TPM).
| Name | Type | Req | Description |
|---|---|---|---|
| datasetId | string | – | gtex_v8 (default) | gtex_v10 |
| gene | string | yes | Gene symbol (e.g. "TP53") or versioned Gencode id (e.g. "ENSG00000141510.16"). Symbols are resolved automatically. |
No output schema declared.
No examples provided.
single_tissue_eqtls ~39
Significant single-tissue eQTLs for a gene.
| Name | Type | Req | Description |
|---|---|---|---|
| gencode_id | string | yes | – |
| tissue | string | – | – |
No output schema declared.
No examples provided.
tissues ~100
GTEx Portal (Genotype-Tissue Expression project) — the catalogue of human tissue sites GTEx sampled, such as Liver, Whole_Blood and Brain_Cortex. Returns each tissue's tissueSiteDetailId, display name, parent tissue site, RNA-seq and genotype sample counts and colour code; that id is the spelling every other GTEx expression and eQTL tool expects. Answers which human tissues GTEx covers and how a tissue id is spelled.
Input schema present but exposes no named parameters.
No output schema declared.
No examples provided.
top_expressed_genes ~171
GTEx Portal (Genotype-Tissue Expression project) — the genes with the highest median expression in one human tissue, given a GTEx tissueSiteDetailId such as Liver or Whole_Blood. Returns ranked genes with Gencode id, gene symbol and median TPM, with a settable result count and an optional mitochondrial-gene filter. Answers which genes are most highly expressed in human liver, brain or blood.
| Name | Type | Req | Description |
|---|---|---|---|
| datasetId | string | – | gtex_v8 (default) | gtex_v10 |
| filter_mt_gene | boolean | – | Exclude mitochondrial genes (default true). |
| num | number | – | 1-1000 (default 50). |
| tissue | string | yes | GTEx tissueSiteDetailId (e.g. "Liver", "Whole_Blood") |
No output schema declared.
No examples provided.
How do I install the Gtex MCP server?
Gtex runs locally as an npm package, launched with npx -y @pipeworx/mcp-gtex. Ready-made configuration for Claude, Cursor, VS Code, Codex and 5 more is on this page, copied from each client's own documentation.
npm · @pipeworx/mcp-gtex
claude mcp add pipeworx-io-gtex -- npx -y @pipeworx/mcp-gtex
What is the Gtex MCP server?
Gtex is an MCP server listed in the public MCP registry as io.github.pipeworx-io/gtex. GTEx MCP. This page covers its npm package (@pipeworx/mcp-gtex).
Is the Gtex MCP server safe to use?
Gtex scores 83 out of 100 on VerifyMCP. We found no known CVEs affecting it as of 5 November 2026. It declares no install or post-install scripts. Its build provenance is signed and verified. That is a record of what we were able to check automatically, not an endorsement. The category breakdown on this page shows every signal behind the number, including the ones we could not confirm.
What tools does the Gtex MCP server expose?
Gtex exposes 5 tools: gene, median_expression, top_expressed_genes, single_tissue_eqtls, tissues. Their descriptions and schemas cost roughly 417 tokens of context every time the server is loaded.
Is the Gtex MCP server still maintained?
Gtex is still listed as active in the MCP registry. We last reached this channel on 5 November 2026. Those dates come from our own scans of the registry and the channel itself, not from anything the publisher announced.
What licence is the Gtex MCP server under?
Gtex declares the MIT licence, which is OSI-approved. That covers the source only, and says nothing about the cost of any service it calls.