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io.github.galaxyproject/galaxy-mcp

PYPI · GALAXY-MCP · SCANNED AUG 3

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

Available components

−3 this week 21 Trust /100
Trust breakdown (6 categories)

How this component scores in each security and reliability category. Every signal is checked automatically from public evidence about the published package, including repeated runs of it in an isolated sandbox, and we only credit what we can confirm. How we score →

Supply Chain Security49
  • Malware scan not yet available for this package.Unverified
  • No known CVEs affecting this package version or its production dependencies.Pass
  • Runs setuptools.build_meta at install time, a recognised native-build step with no shell scripting around it. View diagnostics → Pass
  • 3 of 41 dependencies flagged as unhealthy. View diagnostics → Partial
Provenance & Transparency32
Schema Quality & AI Usability0
  • Schema quality not yet verified: our sandbox run of this package did not complete, so we have no schema to assess.Unverified
Stability & Change Management0
  • Stability not yet verified: our sandbox run of this package did not complete, so we have no schema to compare.Unverified
Tool Coverage0
  • Tool coverage not yet verified: our sandbox run of this package did not complete, so we have no tool definitions to assess.Unverified
Capabilities0
  • Protocol version not yet verified: our sandbox run of this package did not complete, so we never saw its MCP handshake.Unverified

Unverified: 4 categories

Categories scored 0 because our sandbox run of this package has not given us the schema these checks need to read. That is a gap on our side rather than a finding about the package, and we only credit what we can confirm, so the score stands at 0 until the capture succeeds. We are working through the fleet, so this normally clears without any action from you. How we score packages →

Install

Add this component to your MCP client. Where a client-specific snippet is available, pick your client below and copy it straight into your config; otherwise use the connection detail shown.

pypi · galaxy-mcp

# add to Claude Code
claude mcp add galaxyproject-galaxy-mcp -- uvx galaxy-mcp
# add to Codex CLI
codex mcp add galaxyproject-galaxy-mcp -- uvx galaxy-mcp
// opencode.json
{
  "$schema": "https://opencode.ai/config.json",
  "mcp": {
    "galaxyproject-galaxy-mcp": {
      "type": "local",
      "command": [
        "uvx",
        "galaxy-mcp"
      ],
      "enabled": true
    }
  }
}
# add to OpenClaw
openclaw mcp add galaxyproject-galaxy-mcp --command uvx --arg galaxy-mcp
# ~/.hermes/config.yaml
mcp_servers:
  galaxyproject-galaxy-mcp:
    command: "uvx"
    args: ["galaxy-mcp"]
// mcp.json
{
  "mcpServers": {
    "galaxyproject-galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ]
    }
  }
}
Changelog

Every change we have recorded for this component, newest first. Security-relevant changes are always shown. ▲ marks a change for the better, ▼ a change for the worse; unmarked changes are neutral.

  • 3 Aug 26 −15
    • Malware scan: pass → unverified security
  • 2 Aug 26 +15
    • Malware scan: unverified → pass security
  • 31 Jul 26 +15
    • We updated how we score, so this day's move reflects our rubric, not a change to the server See what changed → functional
  • 30 Jul 26 −18
    • Malware scan: pass → unverified security
  • 27 Jul 26 24

    First indexed and scored.

Diagnostics

Diagnostic detail from the automated scan of this channel: what the scanner observed at each step, so you can see exactly where a check passed or failed. It is informational only and never changes the trust score.

Captured 3 Aug 2026 · Analysed pypi/[email protected]

Provenance none

Ecosystem: pypi · Outcome: none

Install scripts 1 script
Hook Tier Command
build_backend allowlisted setuptools.build_meta
Dependencies 41 packages

41 packages in the resolved dependency tree · 3 stale.

MCP tools

The tools this component advertises to a client, with an estimated token cost for each. Expand a tool to see its parameters and schema. The per-tool counts are indicative and are not scored directly; the schema's total context footprint is one signal in Schema Quality & AI Usability.

Tools for package channels are captured by running the package in an isolated sandbox. The most recent sandbox run could not capture a tool list from this package.