{"$schema":"https://verifymcp.io/schemas/trust-report.json","schemaVersion":1,"license":{"name":"CC BY-NC 4.0","url":"https://creativecommons.org/licenses/by-nc/4.0/"},"generatedAt":"2026-11-05T17:13:22.690Z","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info","markdownUrl":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info.md","server":{"slug":"pipeworx-io-mygene-info","name":"Mygene Info","registryName":"io.github.pipeworx-io/mygene-info","description":"MyGene.info MCP. Docs: https://docs.mygene.info/en/latest/","registryStatus":"active","deletedAt":null,"statusMessage":null,"liveness":"live","publisher":{"class":"unknown","claimed":false}},"component":{"slug":"pipeworx-mcp-mygene-info","type":"npm","identifier":"@pipeworx/mcp-mygene-info","withdrawn":false,"url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info","version":"0.2.1","transport":"stdio","scoredAt":"2026-11-05T00:31:51.949Z"},"score":{"total":81,"tier":"high trust","status":"scored","weekDelta":3,"history":[{"date":"2026-11-05","total":81},{"date":"2026-11-04","total":81},{"date":"2026-11-03","total":66},{"date":"2026-11-02","total":80},{"date":"2026-11-01","total":80},{"date":"2026-10-31","total":79},{"date":"2026-10-30","total":79},{"date":"2026-10-29","total":78}]},"categories":[{"name":"Supply Chain Security","score":100,"verdict":"pass","reasons":["No malware found by supply-chain analysis.","No known CVEs affecting this package version or its production dependencies.","No install/post-install scripts declared.","No production dependencies, so there is no dependency health to assess."],"codes":[{"code":"supplychain.malware_clean","args":{}},{"code":"cve.none","args":{}},{"code":"installscript.none","args":{}},{"code":"dephealth.no_dependencies","args":{"deps":"0","unhealthy":"0"}}]},{"name":"Provenance & Transparency","score":97,"verdict":"fail","reasons":["Source repository is publicly reachable at the declared URL.","Cryptographically verified build provenance (signed, bound to pipeworx-io/mcp-mygene-info).","Clear OSI-approved license (MIT).","Actively maintained (last published 1 days ago).","Disclosure check failed: no security disclosure policy was found in the source repository."],"codes":[{"code":"provenance.repo_verified","args":{}},{"code":"provenance.verified","args":{"repo":"pipeworx-io/mcp-mygene-info"}},{"code":"license.osi","args":{"spdx":"MIT"}},{"code":"maintenance.recent","args":{"age_days":"1"}},{"code":"disclosure.absent","args":{}}]},{"name":"Schema Quality & AI Usability","score":68,"verdict":"fail","reasons":["AI-judged instruction clarity (good).","Tool/resource definitions use about 329 tokens (~65/item across 5 items; 5 tools + 0 resources), lean.","Usage-examples check failed: none of the tools include examples."],"codes":[{"code":"schema.ai_quality","args":{"band":"good"}},{"code":"schema.footprint_lean","args":{"avg":"65","items":"5","tools":"5","tokens":"329","resources":"0"}},{"code":"schema.examples_absent","args":{}}]},{"name":"Stability & Change Management","score":23,"verdict":"partial","reasons":["Stability observed for 7 of 30 days with no destabilising changes; credit accrues until the full window elapses."],"codes":[{"code":"stability.building_history","args":{"days":"7"}}]},{"name":"Tool Coverage","score":82,"verdict":"partial","reasons":["100% of tools have a non-trivial description (not blank, and not just the tool's name).","46% of tool parameters carry a description."],"codes":[{"code":"toolquality.descriptions","args":{"pct":"100"}},{"code":"toolquality.param_docs","args":{"pct":"46"}}]},{"name":"Tool Safety","score":100,"verdict":"pass","reasons":["No prompt-injection markers were found in the server instructions, tool names or descriptions we captured.","We read all 5 captured tool definition(s), and no name or description among them implies an irreversible operation.","An AI judge read all 6 captured unit(s) of tool text and found none that tries to manipulate the model reading it."],"codes":[{"code":"toolsafety.injection_clean","args":{}},{"code":"toolsafety.destructive_none","args":{"tools":"5"}},{"code":"toolsafety.manipulation_clean","args":{"units":"6","judged":"6"}}]},{"name":"Capabilities","score":100,"verdict":"pass","reasons":["Implements a supported MCP spec version (2025-11-25); the latest is 2026-07-28."],"codes":[{"code":"protocol.supported","args":{"latest":"2026-07-28","version":"2025-11-25"}}]}],"inconclusive":[],"malware":[],"components":[{"slug":"mygene-info-mcp","type":"remote","identifier":"https://gateway.pipeworx.io/mygene-info/mcp","withdrawn":false,"score":84,"current":false,"url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/mygene-info-mcp","markdownUrl":"https://verifymcp.io/servers/pipeworx-io-mygene-info/mygene-info-mcp.md"},{"slug":"pipeworx-mcp-mygene-info","type":"npm","identifier":"@pipeworx/mcp-mygene-info","withdrawn":false,"score":81,"current":true,"url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info","markdownUrl":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info.md"}],"facts":[{"label":"Registry","value":"npm"},{"label":"Package","value":"@pipeworx/mcp-mygene-info"},{"label":"Version","value":"0.2.1"},{"label":"Transport","value":"stdio"}],"install":{"available":true,"bundleSha256":null},"tools":[{"name":"query","title":null,"description":"Full-text gene query.","inputs":[{"name":"fields","type":"string","required":false,"description":"Comma-sep return fields."},{"name":"query","type":"string","required":true,"description":"e.g. \"BRCA1\", \"symbol:TP53 AND taxid:9606\""},{"name":"size","type":"number","required":false,"description":"1-1000 (default 10)."},{"name":"sort","type":"string","required":false,"description":null},{"name":"species","type":"string","required":false,"description":"NCBI taxonomy id or common name (default human)."}],"outputs":[],"hasOutputSchema":false,"hasExamples":false,"tokenEstimate":92},{"name":"gene","title":null,"description":"Annotations for a single gene id.","inputs":[{"name":"fields","type":"string","required":false,"description":null},{"name":"gene_id","type":"string","required":true,"description":"Entrez id (\"7157\") or Ensembl id (\"ENSG00000141510\")."},{"name":"species","type":"string","required":false,"description":null}],"outputs":[],"hasOutputSchema":false,"hasExamples":false,"tokenEstimate":55},{"name":"query_many","title":null,"description":"Batch-resolve a list of gene symbols, Entrez IDs, or Ensembl IDs (up to 1000) via a single POST to mygene.info, searching across specified scopes (default: symbol) and returning annotations for each matched gene.","inputs":[{"name":"fields","type":"string","required":false,"description":null},{"name":"ids","type":"array","required":true,"description":null},{"name":"scopes","type":"string","required":false,"description":"Comma-sep fields to search in (default symbol)."},{"name":"species","type":"string","required":false,"description":null}],"outputs":[],"hasOutputSchema":false,"hasExamples":false,"tokenEstimate":97},{"name":"metadata","title":null,"description":"Release / source metadata.","inputs":[],"outputs":[],"hasOutputSchema":false,"hasExamples":false,"tokenEstimate":12},{"name":"taxonomy","title":null,"description":"Species taxonomy info.","inputs":[{"name":"species","type":"string","required":true,"description":null}],"outputs":[],"hasOutputSchema":false,"hasExamples":false,"tokenEstimate":18}],"toolsTruncatedAtCapture":false,"diagnostics":{"capturedAt":"2026-11-05T00:31:51.000Z","track":"package","endpoint":null,"declaredUrl":null,"truncated":false,"tls":null,"dnssec":null,"auth":null,"httpsRedirect":null,"transports":[],"provenance":{"outcome":"verified","label":"Verified","reason":"verified","reasonLabel":"Verified","discovery":"attestation_endpoint","discoveryLabel":"Registry attestation endpoint","sourceRepo":null,"attestationSkipped":null,"attestationSkippedLabel":null},"installScripts":[],"installScriptsTotal":null,"vulnerabilities":[],"vulnerabilitiesTotal":null,"dependencies":{"nodes":0,"partial":false,"deprecated":null,"stale":null,"noRepo":null}},"mismatches":[],"changelog":{"trackingSince":"2026-10-29","recent":[{"id":"chg_01a1a3fd-fcd0-743a-92e7-995997b76e13","kind":"score.total_changed","summary":"Trust score (66 → 81)","materiality":"functional","direction":"improvement","scoreDelta":15,"occurredOn":"2026-11-04","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a1a3fd-fcd0-743a-92e7-995997b76e13"},{"id":"chg_01a1a3fd-fccc-70c7-8e23-590d1e7ed22b","kind":"check.reverified","summary":"Malware scan (unverified → pass)","materiality":"security","direction":"improvement","scoreDelta":null,"occurredOn":"2026-11-04","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a1a3fd-fccc-70c7-8e23-590d1e7ed22b"},{"id":"chg_01a19f4c-69c2-7d17-beaa-395785f81360","kind":"package.version_changed","summary":"Package version (0.2.0 → 0.2.1)","materiality":"functional","direction":"neutral","scoreDelta":null,"occurredOn":"2026-11-03","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a19f4c-69c2-7d17-beaa-395785f81360"},{"id":"chg_01a19f4c-69bf-7227-8f2b-ca868583e9db","kind":"check.unverifiable","summary":"Malware scan (pass → unverified)","materiality":"security","direction":"regression","scoreDelta":null,"occurredOn":"2026-11-03","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a19f4c-69bf-7227-8f2b-ca868583e9db"},{"id":"chg_01a19f4c-69c3-75ce-9ece-3903f949609e","kind":"score.total_changed","summary":"Trust score (81 → 66)","materiality":"functional","direction":"regression","scoreDelta":-15,"occurredOn":"2026-11-03","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a19f4c-69c3-75ce-9ece-3903f949609e"},{"id":"chg_01a19ec0-dda6-72e4-92d8-7ecbb0f79149","kind":"score.total_changed","summary":"Trust score (80 → 81)","materiality":"functional","direction":"improvement","scoreDelta":1,"occurredOn":"2026-11-03","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a19ec0-dda6-72e4-92d8-7ecbb0f79149"},{"id":"chg_01a1947e-57be-7e41-bd99-133547955c9b","kind":"score.total_changed","summary":"Trust score (79 → 80)","materiality":"functional","direction":"improvement","scoreDelta":1,"occurredOn":"2026-11-01","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a1947e-57be-7e41-bd99-133547955c9b"},{"id":"chg_01a18a1c-9d00-7069-a4fb-9dd1467bb898","kind":"score.total_changed","summary":"Trust score (78 → 79)","materiality":"functional","direction":"improvement","scoreDelta":1,"occurredOn":"2026-10-30","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a18a1c-9d00-7069-a4fb-9dd1467bb898"},{"id":"chg_01a18671-1fc3-7001-bdf1-7c2a8c16801a","kind":"score.first_scored","summary":"First indexed and scored","materiality":"functional","direction":"neutral","scoreDelta":null,"occurredOn":"2026-10-29","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a18671-1fc3-7001-bdf1-7c2a8c16801a"},{"id":"chg_01a18644-88e6-7b63-9fa7-0f8b8a50bc5e","kind":"score.first_scored","summary":"First indexed and scored","materiality":"functional","direction":"neutral","scoreDelta":null,"occurredOn":"2026-10-29","url":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info#chg-chg_01a18644-88e6-7b63-9fa7-0f8b8a50bc5e"}],"truncated":false,"feedUrl":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info/changelog.json"},"links":{"html":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info","markdown":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info.md","changelogJson":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info/changelog.json","changelogRss":"https://verifymcp.io/servers/pipeworx-io-mygene-info/pipeworx-mcp-mygene-info.xml","external":[{"label":"npm package","href":"https://www.npmjs.com/package/@pipeworx/mcp-mygene-info"},{"label":"Socket report","href":"https://socket.dev/npm/package/@pipeworx/mcp-mygene-info"},{"label":"Repository","href":"https://github.com/pipeworx-io/mcp-mygene-info"},{"label":"Website","href":"https://pipeworx.io/packs/mygene-info"}]}}