{"$schema":"https://verifymcp.io/schemas/trust-report.json","schemaVersion":1,"license":{"name":"CC BY-NC 4.0","url":"https://creativecommons.org/licenses/by-nc/4.0/"},"generatedAt":"2026-11-05T20:30:40.578Z","url":"https://verifymcp.io/servers/pipeworx-io-kegg/pipeworx-mcp-kegg","markdownUrl":"https://verifymcp.io/servers/pipeworx-io-kegg/pipeworx-mcp-kegg.md","server":{"slug":"pipeworx-io-kegg","name":"Kegg","registryName":"io.github.pipeworx-io/kegg","description":"KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.","registryStatus":"active","deletedAt":null,"statusMessage":null,"liveness":"live","publisher":{"class":"unknown","claimed":false}},"component":{"slug":"pipeworx-mcp-kegg","type":"npm","identifier":"@pipeworx/mcp-kegg","withdrawn":false,"url":"https://verifymcp.io/servers/pipeworx-io-kegg/pipeworx-mcp-kegg","version":"0.2.1","transport":"stdio","scoredAt":"2026-11-05T07:29:27.728Z"},"score":{"total":84,"tier":"high trust","status":"scored","weekDelta":3,"history":[{"date":"2026-11-05","total":84},{"date":"2026-11-04","total":83},{"date":"2026-11-03","total":83},{"date":"2026-11-02","total":67},{"date":"2026-11-01","total":82},{"date":"2026-10-31","total":82},{"date":"2026-10-30","total":81},{"date":"2026-10-29","total":81}]},"categories":[{"name":"Supply Chain Security","score":100,"verdict":"pass","reasons":["No malware found by supply-chain analysis.","No known CVEs affecting this package version or its production dependencies.","No install/post-install scripts declared.","No production dependencies, so there is no dependency health to assess."],"codes":[{"code":"supplychain.malware_clean","args":{}},{"code":"cve.none","args":{}},{"code":"installscript.none","args":{}},{"code":"dephealth.no_dependencies","args":{"deps":"0","unhealthy":"0"}}]},{"name":"Provenance & Transparency","score":97,"verdict":"fail","reasons":["Source repository is publicly reachable at the declared URL.","Cryptographically verified build provenance (signed, bound to pipeworx-io/mcp-kegg).","Clear OSI-approved license (MIT).","Actively maintained (last published 2 days ago).","Disclosure check failed: no security disclosure policy was found in the source repository."],"codes":[{"code":"provenance.repo_verified","args":{}},{"code":"provenance.verified","args":{"repo":"pipeworx-io/mcp-kegg"}},{"code":"license.osi","args":{"spdx":"MIT"}},{"code":"maintenance.recent","args":{"age_days":"2"}},{"code":"disclosure.absent","args":{}}]},{"name":"Schema Quality & AI Usability","score":73,"verdict":"fail","reasons":["AI-judged instruction clarity (good).","Context-footprint check failed: tool/resource definitions use about 446 tokens (~148/item across 3 items; 3 tools + 0 resources), over budget; trim descriptions and params.","Usage-examples check failed: none of the tools include examples."],"codes":[{"code":"schema.ai_quality","args":{"band":"good"}},{"code":"schema.footprint_heavy","args":{"avg":"148","items":"3","tools":"3","tokens":"446","resources":"0"}},{"code":"schema.examples_absent","args":{}}]},{"name":"Stability & Change Management","score":23,"verdict":"partial","reasons":["Stability observed for 7 of 30 days with no destabilising changes; credit accrues until the full window elapses."],"codes":[{"code":"stability.building_history","args":{"days":"7"}}]},{"name":"Tool Coverage","score":100,"verdict":"pass","reasons":["100% of tools have a non-trivial description (not blank, and not just the tool's name).","100% of tool parameters carry a description."],"codes":[{"code":"toolquality.descriptions","args":{"pct":"100"}},{"code":"toolquality.param_docs","args":{"pct":"100"}}]},{"name":"Tool Safety","score":100,"verdict":"pass","reasons":["No prompt-injection markers were found in the server instructions, tool names or descriptions we captured.","We read all 3 captured tool definition(s), and no name or description among them implies an irreversible operation.","An AI judge read all 4 captured unit(s) of tool text and found none that tries to manipulate the model reading it."],"codes":[{"code":"toolsafety.injection_clean","args":{}},{"code":"toolsafety.destructive_none","args":{"tools":"3"}},{"code":"toolsafety.manipulation_clean","args":{"units":"4","judged":"4"}}]},{"name":"Capabilities","score":100,"verdict":"pass","reasons":["Implements a supported MCP spec version (2025-11-25); the latest is 2026-07-28."],"codes":[{"code":"protocol.supported","args":{"latest":"2026-07-28","version":"2025-11-25"}}]}],"inconclusive":[],"malware":[],"components":[{"slug":"kegg-mcp","type":"remote","identifier":"https://gateway.pipeworx.io/kegg/mcp","withdrawn":false,"score":77,"current":false,"url":"https://verifymcp.io/servers/pipeworx-io-kegg/kegg-mcp","markdownUrl":"https://verifymcp.io/servers/pipeworx-io-kegg/kegg-mcp.md"},{"slug":"pipeworx-mcp-kegg","type":"npm","identifier":"@pipeworx/mcp-kegg","withdrawn":false,"score":84,"current":true,"url":"https://verifymcp.io/servers/pipeworx-io-kegg/pipeworx-mcp-kegg","markdownUrl":"https://verifymcp.io/servers/pipeworx-io-kegg/pipeworx-mcp-kegg.md"}],"facts":[{"label":"Registry","value":"npm"},{"label":"Package","value":"@pipeworx/mcp-kegg"},{"label":"Version","value":"0.2.1"},{"label":"Transport","value":"stdio"}],"install":{"available":true,"bundleSha256":null},"tools":[{"name":"find","title":null,"description":"Search KEGG by keyword. KEGG is the authoritative bioinformatics database for compounds, drugs, diseases, metabolic pathways, genes, and enzymes. Pick a database (compound|drug|disease|pathway|genes|enzyme|glycan|module|ko) and pass a query like \"glucose\", \"aspirin\", or \"diabetes\". Returns matching KEGG IDs with descriptions. Keyless.","inputs":[{"name":"database","type":"string","required":true,"description":"One of: compound, drug, disease, pathway, genes, enzyme, glycan, module, ko."},{"name":"query","type":"string","required":true,"description":"Search term, e.g. \"glucose\", \"aspirin\", \"diabetes\"."}],"outputs":[],"hasOutputSchema":false,"hasExamples":false,"tokenEstimate":142},{"name":"get_entry","title":null,"description":"Fetch a full KEGG flat-file entry by ID and return it as parsed fields plus raw text. IDs look like \"C00031\" (compound), \"hsa00010\" (pathway), \"D00009\" (drug), \"K00844\" (KO/ortholog), or \"ec:1.1.1.1\" (enzyme). Parsed fields include ENTRY, NAME, FORMULA, CLASS, PATHWAY, DESCRIPTION, cross-references, and more. Use find first to discover IDs. Keyless.","inputs":[{"name":"id","type":"string","required":true,"description":"A KEGG entry ID, e.g. \"C00031\", \"hsa00010\", \"D00009\", \"K00844\", \"ec:1.1.1.1\"."}],"outputs":[],"hasOutputSchema":false,"hasExamples":false,"tokenEstimate":164},{"name":"list_database","title":null,"description":"List all entries in a KEGG database (id + description). Useful for enumerating things like KEGG pathways (\"pathway\"), drugs (\"drug\"), or supported organisms (\"organism\"). Results are capped at 100 with a truncated flag. Keyless.","inputs":[{"name":"database","type":"string","required":true,"description":"A KEGG database name, e.g. \"pathway\", \"organism\", \"drug\", \"compound\"."}],"outputs":[],"hasOutputSchema":false,"hasExamples":false,"tokenEstimate":88}],"toolsTruncatedAtCapture":false,"diagnostics":{"capturedAt":"2026-11-05T07:29:27.000Z","track":"package","endpoint":null,"declaredUrl":null,"truncated":false,"tls":null,"dnssec":null,"auth":null,"httpsRedirect":null,"transports":[],"provenance":{"outcome":"verified","label":"Verified","reason":"verified","reasonLabel":"Verified","discovery":"attestation_endpoint","discoveryLabel":"Registry attestation endpoint","sourceRepo":null,"attestationSkipped":null,"attestationSkippedLabel":null},"installScripts":[],"installScriptsTotal":null,"vulnerabilities":[],"vulnerabilitiesTotal":null,"dependencies":{"nodes":0,"partial":false,"deprecated":null,"stale":null,"noRepo":null}},"mismatches":[],"changelog":{"trackingSince":"2026-10-29","recent":[{"id":"chg_01a1aa9c-d6c9-7dd0-a3e9-9c30c889f559","kind":"score.total_changed","summary":"Trust score (83 → 84)","materiality":"functional","direction":"improvement","scoreDelta":1,"occurredOn":"2026-11-05","url":"https://verifymcp.io/servers/pipeworx-io-kegg/pipeworx-mcp-kegg#chg-chg_01a1aa9c-d6c9-7dd0-a3e9-9c30c889f559"},{"id":"chg_01a1a052-5481-7bf4-9120-e19795c0da39","kind":"check.reverified","summary":"Malware scan (unverified → 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